Transcript: lnc-TMEM105-2:32

Basic information

LNCipedia transcript ID: lnc-TMEM105-2:32 
LNCipedia gene ID: lnc-TMEM105-2
Location (hg38): chr17:81388130-81390256
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1561 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000571724.2; RP11-1055B8.4-001; OTTHUMT00000439901.2
Alternative gene names: ENSG00000262877.2; RP11-1055B8.4; OTTHUMG00000177951.2; ENSG00000262877.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.4232 non-coding 
CPAT coding probability 29.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM105-2:32 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM105-3:2
4.0 lnc-TMEM105-3:2
4.1 lnc-TMEM105-2:32
5.0 lnc-TMEM105-2:32
5.1 lnc-NPLOC4-13:13
5.2 lnc-TMEM105-2:32