Transcript: lnc-TMEM105-2:5

Basic information

LNCipedia transcript ID: lnc-TMEM105-2:5 
LNCipedia gene ID: lnc-TMEM105-2
Ensembl Gene ID: ENSG00000262223
Ensembl Transcript ID: ENST00000572077
Location (hg38): chr17:81376001-81385360
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572077.1; RP11-1055B8.3-001; OTTHUMT00000439895.1; ENST00000572077.5
Alternative gene names: ENSG00000262223.1; RP11-1055B8.3; OTTHUMG00000177950.1; ENSG00000262223.2; ENSG00000262223.6; AC110285.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.8548 non-coding 
CPAT coding probability 16.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM105-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM105-2:5
4.0 lnc-TMEM105-2:5
4.1 lnc-TMEM105-2:5
5.0 lnc-TMEM105-2:5
5.1 lnc-NPLOC4-13:22
5.2 lnc-TMEM105-2:5