Transcript: lnc-TMEM106C-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM106C-1:1 
LNCipedia gene ID: lnc-TMEM106C-1
Ensembl Gene ID: ENSG00000257985
Ensembl Transcript ID: ENST00000546738
Location (hg38): chr12:48011304-48025469
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3112 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546738.1; RP1-228P16.4-001; OTTHUMT00000406466.1; NONHSAT027973
Alternative gene names: ENSG00000257985.1; RP1-228P16.4; OTTHUMG00000169894.1; AC004801.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8102 non-coding 
CPAT coding probability 7.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM106C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM106C-1:1
4.0 lnc-TMEM106C-1:1
4.1 lnc-TMEM106C-1:1
5.0 lnc-TMEM106C-1:1
5.1 lnc-SLC48A1-15:1
5.2 lnc-TMEM106C-1:1