Transcript: lnc-TMEM117-4:1

Basic information

LNCipedia transcript ID: lnc-TMEM117-4:1 
LNCipedia gene ID: lnc-TMEM117-4
Location (hg38): chr12:44669893-44857586
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1527 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: l_632_chr12:45063675-45150311_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.8158 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM117-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM117-4:1
4.0 lnc-TMEM117-4:1
4.1 lnc-TMEM117-4:1
5.0 lnc-TMEM117-4:1
5.1 lnc-IRAK4-7:1
5.2 lnc-TMEM117-4:1