Transcript: lnc-TMEM14A-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM14A-1:1 
LNCipedia gene ID: lnc-TMEM14A-1
RefSeq ID: NR_024405
Location (hg38): chr6:52664401-52669153
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3554 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011122; NONHSAT113139; NR_024405; NR_024405.1
Alternative gene names: XLOC_005323; linc-TMEM14A-1; LOC730101


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.1507 non-coding 
CPAT coding probability 21.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM14A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM14A-1:1
3.1 lnc-TMEM14A-1:1
4.0 lnc-TMEM14A-1:1
4.1 lnc-TMEM14A-1:1
5.0 lnc-TMEM14A-1:1
5.1 lnc-EFHC1-6:1
5.2 lnc-TMEM14A-1:1