Transcript: lnc-TMEM161B-16:1

Basic information

LNCipedia transcript ID: lnc-TMEM161B-16:1 
LNCipedia gene ID: lnc-TMEM161B-16
Location (hg38): chr5:87376256-87377180
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 925 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000607486.1
Alternative gene names: ENSG00000272367.1; CTC-428H11.2; AC018754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 142.914 coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM161B-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCNH-5:1
4.0 lnc-CCNH-5:1
4.1 lnc-CCNH-5:1
5.0 lnc-CCNH-5:1
5.1 lnc-ANKRD34B-126:1
5.2 lnc-TMEM161B-16:1