Transcript: lnc-TMEM161B-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM161B-3:1 
LNCipedia gene ID: lnc-TMEM161B-3
Location (hg38): chr5:88433885-88498697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 419 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00009719; ENST00000504034; ENST00000504034.1; CTC-498M16.2-002; OTTHUMT00000370142.1; NONHSAT102656
Alternative gene names: XLOC_004917; linc-TMEM161B-3; ENSG00000250156; CTC-498M16.2; ENSG00000250156.1; OTTHUMG00000162703.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.8307 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM161B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM161B-3:1
3.1 lnc-TMEM161B-3:1
4.0 lnc-TMEM161B-3:1
4.1 lnc-TMEM161B-3:1
5.0 lnc-TMEM161B-3:1
5.1 lnc-ANKRD34B-153:1
5.2 lnc-TMEM161B-3:1