Transcript: lnc-TMEM161B-3:2

Basic information

LNCipedia transcript ID: lnc-TMEM161B-3:2 
LNCipedia gene ID: lnc-TMEM161B-3
Ensembl Gene ID: ENSG00000271904
Ensembl Transcript ID: ENST00000504034
Location (hg38): chr5:88433892-88498697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504034.2
Alternative gene names: ENSG00000271904.1; CTC-498M16.4; AC091826.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.8307 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM161B-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM161B-3:2
4.0 lnc-TMEM161B-3:2
4.1 lnc-TMEM161B-3:2
5.0 lnc-TMEM161B-3:2
5.1 lnc-ANKRD34B-153:2
5.2 lnc-TMEM161B-3:2