Transcript: lnc-TMEM170A-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM170A-1:1 
LNCipedia gene ID: lnc-TMEM170A-1
Location (hg38): chr16:75465374-75465875
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024729; NONHSAT143738
Alternative gene names: XLOC_012010; linc-TMEM170A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.6164 non-coding 
CPAT coding probability 7.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM170A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-77K12.1.1-1:1
3.1 lnc-RP11-77K12.1.1-1:1
4.0 lnc-RP11-77K12.1.1-1:1
4.1 lnc-RP11-77K12.1.1-1:1
5.0 lnc-RP11-77K12.1.1-1:1
5.1 lnc-MLKL-29:1
5.2 lnc-TMEM170A-1:1