Transcript: lnc-TMEM170A-4:1

Basic information

LNCipedia transcript ID: lnc-TMEM170A-4:1 
LNCipedia gene ID: lnc-TMEM170A-4
Ensembl Gene ID: ENSG00000261783
Ensembl Transcript ID: ENST00000561956
Location (hg38): chr16:75379818-75381260
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 374 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561956.1; RP11-252K23.2-001; OTTHUMT00000435474.1; NONHSAT143733
Alternative gene names: ENSG00000261783.1; RP11-252K23.2; OTTHUMG00000177128.1; AC009054.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.6416 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM170A-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-77K12.1.1-2:1
4.0 lnc-RP11-77K12.1.1-2:1
4.1 lnc-RP11-77K12.1.1-2:1
5.0 lnc-RP11-77K12.1.1-2:1
5.1 lnc-MLKL-25:1
5.2 lnc-TMEM170A-4:1