Transcript: lnc-TMEM173-3:4

Basic information

LNCipedia transcript ID: lnc-TMEM173-3:4 
LNCipedia gene ID: lnc-TMEM173-3
Location (hg38): chr5:139643659-139648196
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4538 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081403.1|FTMT21800009952.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.9588 non-coding 
CPAT coding probability 11.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM173-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM173-3:4
5.0 lnc-TMEM173-3:4
5.1 lnc-DND1-35:3
5.2 lnc-TMEM173-3:4