Transcript: lnc-TMEM178A-1:16

Basic information

LNCipedia transcript ID: lnc-TMEM178A-1:16 
LNCipedia gene ID: lnc-TMEM178A-1
Ensembl Gene ID: ENSG00000231312
Ensembl Transcript ID: ENST00000366187
Location (hg38): chr2:39453839-39454726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366187.2; AC007246.3-011; OTTHUMT00000331792.1; NONHSAT070237
Alternative gene names: ENSG00000231312.2; AC007246.3; OTTHUMG00000152299.2; ENSG00000231312.6; AC007388.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8332 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM178A-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM178-1:6
4.0 lnc-TMEM178-1:6
4.1 lnc-TMEM178-1:6
5.0 lnc-TMEM178-1:6
5.1 lnc-RASGRP3-51:16
5.2 lnc-TMEM178A-1:16