Transcript: lnc-TMEM178A-1:9

Basic information

LNCipedia transcript ID: lnc-TMEM178A-1:9 
LNCipedia gene ID: lnc-TMEM178A-1
Location (hg38): chr2:39437425-39498559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 24444 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231312.2|ENCT00000222788.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
QREEEEEGK 100% antisense-3
Lee translation initiation sites non-coding 
PhyloCSF score 31.2136 non-coding 
CPAT coding probability 61.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM178A-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM178-1:30
5.0 lnc-TMEM178-1:30
5.1 lnc-RASGRP3-51:9
5.2 lnc-TMEM178A-1:9