Transcript: lnc-TMEM178A-6:4

Basic information

LNCipedia transcript ID: lnc-TMEM178A-6:4 
LNCipedia gene ID: lnc-TMEM178A-6
Location (hg38): chr2:40511922-40545438
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 603 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042543.1|FTMT20700003303.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -139.8643 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM178A-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM178-6:6
5.0 lnc-TMEM178-6:6
5.1 lnc-EPAS1-58:4
5.2 lnc-TMEM178A-6:4