Transcript: lnc-TMEM178A-6:5

Basic information

LNCipedia transcript ID: lnc-TMEM178A-6:5 
LNCipedia gene ID: lnc-TMEM178A-6
Location (hg38): chr2:40511922-40546019
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 19232 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000042543.1|MICT00000188142.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.1508 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM178A-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM178-6:3
5.0 lnc-TMEM178-6:3
5.1 lnc-EPAS1-58:5
5.2 lnc-TMEM178A-6:5