Transcript: lnc-TMEM179-1:4

Basic information

LNCipedia transcript ID: lnc-TMEM179-1:4 
LNCipedia gene ID: lnc-TMEM179-1
Ensembl Gene ID: ENSG00000258598
Ensembl Transcript ID: ENST00000557687
Location (hg38): chr14:104376530-104378951
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557687; ENST00000557687.1; RP11-260M19.1-001; OTTHUMT00000410578.1; NONHSAT040257
Alternative gene names: ENSG00000258598; RP11-260M19.1; ENSG00000258598.1; OTTHUMG00000170826.1; AL512357.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.4847 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM179-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-614O9.3.1-1:1
3.1 lnc-RP11-614O9.3.1-1:1
4.0 lnc-RP11-614O9.3.1-1:1
4.1 lnc-RP11-614O9.3.1-1:1
5.0 lnc-RP11-614O9.3.1-1:1
5.1 lnc-AKT1-20:1
5.2 lnc-TMEM179-1:4