Transcript: lnc-TMEM185B-4:2

Basic information

LNCipedia transcript ID: lnc-TMEM185B-4:2 
LNCipedia gene ID: lnc-TMEM185B-4
Ensembl Gene ID: ENSG00000229774
Ensembl Transcript ID: ENST00000444963
Location (hg38): chr2:120686635-120710465
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 324 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003392; ENST00000444963; ENST00000444963.1; AC018866.1-001; OTTHUMT00000334823.1; NONHSAT074009
Alternative gene names: XLOC_002298; linc-SCTR-2; ENSG00000229774; AC018866.1; ENSG00000229774.1; OTTHUMG00000154317.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.7575 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM185B-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM185B-3:2
3.1 lnc-TMEM185B-4:2
4.0 lnc-TMEM185B-4:2
4.1 lnc-TMEM185B-4:2
5.0 lnc-TMEM185B-4:2
5.1 lnc-SCTR-12:2
5.2 lnc-TMEM185B-4:2