Transcript: lnc-TMEM189-1:5

Basic information

LNCipedia transcript ID: lnc-TMEM189-1:5 
LNCipedia gene ID: lnc-TMEM189-1
Ensembl Gene ID: ENSG00000237595
Ensembl Transcript ID: ENST00000435301
Location (hg38): chr20:50163464-50166102
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 733 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435301.2
Alternative gene names: ENSG00000237595.2; RP11-112L6.3; ENSG00000237595.3; AL161937.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8053 non-coding 
CPAT coding probability 12.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM189-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM189-1:5
4.0 lnc-TMEM189-1:5
4.1 lnc-TMEM189-1:5
5.0 lnc-TMEM189-1:5
5.1 lnc-SPATA2-6:5
5.2 lnc-TMEM189-1:5