Transcript: lnc-TMEM189-2:2

Basic information

LNCipedia transcript ID: lnc-TMEM189-2:2 
LNCipedia gene ID: lnc-TMEM189-2
Location (hg38): chr20:50242100-50274912
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7097 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055087.1|MICT00000219687.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.2771 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM189-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM189-2:2
5.0 lnc-TMEM189-2:2
5.1 lnc-SPATA2-8:1
5.2 lnc-TMEM189-2:2