Transcript: lnc-TMEM199-1:2

Basic information

LNCipedia transcript ID: lnc-TMEM199-1:2 
LNCipedia gene ID: lnc-TMEM199-1
Ensembl Gene ID: ENSG00000277450
Ensembl Transcript ID: ENST00000613598
Location (hg38): chr17:28373256-28373562
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 307 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613598.1
Alternative gene names: ENSG00000277450.1; CTB-96E2.10; AC002094.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -245.8919 non-coding 
CPAT coding probability 8.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM199-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TNFAIP1-1:1
4.1 lnc-TNFAIP1-1:1
5.0 lnc-TNFAIP1-1:1
5.1 lnc-PIPOX-42:1
5.2 lnc-TMEM199-1:2