Transcript: lnc-TMEM206-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM206-2:1 
LNCipedia gene ID: lnc-TMEM206-2
Ensembl Gene ID: ENSG00000224535
Ensembl Transcript ID: ENST00000439570
Location (hg38): chr1:212466816-212467743
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 359 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000727; ENST00000439570; ENST00000439570.1; RP11-61J19.2-001; OTTHUMT00000089295.1; NONHSAT009372
Alternative gene names: XLOC_001193; linc-TMEM206-4; ENSG00000224535; RP11-61J19.2; ENSG00000224535.1; OTTHUMG00000036746.1; AC092803.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.1819 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM206-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM206-2:1
3.1 lnc-TMEM206-2:1
4.0 lnc-TMEM206-2:1
4.1 lnc-TMEM206-2:1
5.0 lnc-TMEM206-2:1
5.1 lnc-IRF6-48:1
5.2 lnc-TMEM206-2:1