Transcript: lnc-TMEM223-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM223-2:1 
LNCipedia gene ID: lnc-TMEM223-2
Ensembl Gene ID: ENSG00000267811
Ensembl Transcript ID: ENST00000596071
Location (hg38): chr11:62771120-62771606
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 487 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT021803; ENST00000596071.1
Alternative gene names: ENSG00000267811.1; RP11-727F15.11; AP001160.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -747.7927 non-coding 
CPAT coding probability 6.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM223-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM223-2:1
4.0 lnc-TMEM223-2:1
4.1 lnc-TMEM223-2:1
5.0 lnc-TMEM223-2:1
5.1 lnc-LTBP3-119:1
5.2 lnc-TMEM223-2:1