Transcript: lnc-TMEM238L-16:2

Basic information

LNCipedia transcript ID: lnc-TMEM238L-16:2 
LNCipedia gene ID: lnc-TMEM238L-16
RefSeq ID: NR_036581
Location (hg38): chr17:10794913-10804099
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1530 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000581851.1; AC002347.2-001; OTTHUMT00000256321.2; NONHSAT145652; NR_036581; NR_036581.1
Alternative gene names: ENSG00000263429.1; AC002347.2; OTTHUMG00000132847.4; ENSG00000263429.3; LINC00675;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 781.8725 coding 
CPAT coding probability 15.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM238L-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIRT-1:1
4.0 LINC00675:1
4.1 LINC00675:1
5.0 LINC00675:1
5.1 lnc-GAS7-16:2
5.2 lnc-TMEM238L-16:2