Transcript: lnc-TMEM242-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM242-3:1 
LNCipedia gene ID: lnc-TMEM242-3
Ensembl Gene ID: ENSG00000227360
Ensembl Transcript ID: ENST00000449072
Location (hg38): chr6:156493226-156499771
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 533 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011600; ENST00000449072; ENST00000449072.1; RP11-518I13.1-002; OTTHUMT00000042822.1; NONHSAT115690
Alternative gene names: XLOC_005891; linc-NOX3-6; ENSG00000227360; RP11-518I13.1; ENSG00000227360.1; OTTHUMG00000015885.1; AL512658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.57 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM242-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM242-2:1
3.1 lnc-TMEM242-3:1
4.0 lnc-TMEM242-3:1
4.1 lnc-TMEM242-3:1
5.0 lnc-TMEM242-3:1
5.1 lnc-DYNLT1-28:1
5.2 lnc-TMEM242-3:1