Transcript: lnc-TMEM250-1:6

Basic information

LNCipedia transcript ID: lnc-TMEM250-1:6 
LNCipedia gene ID: lnc-TMEM250-1
Location (hg38): chr9:136116804-136118431
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000448040
Alternative gene names: ENSG00000238227; C9orf69


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.1279 non-coding 
CPAT coding probability 14.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM250-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf69-1:2
3.1 lnc-C9orf69-1:2
4.0 lnc-C9orf69-1:2
4.1 lnc-C9orf69-1:2
5.0 lnc-C9orf69-1:2
5.1 lnc-TMEM250-1:2
5.2 lnc-TMEM250-1:6