Transcript: lnc-TMEM250-2:6

Basic information

LNCipedia transcript ID: lnc-TMEM250-2:6 
LNCipedia gene ID: lnc-TMEM250-2
Ensembl Gene ID: ENSG00000260193
Ensembl Transcript ID: ENST00000563018
Location (hg38): chr9:136108105-136109424
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563018.1; RP11-83N9.5-003; OTTHUMT00000431113.1; NONHSAT135489
Alternative gene names: ENSG00000260193.1; RP11-83N9.5; OTTHUMG00000175806.1; AL138781.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.7736 non-coding 
CPAT coding probability 94.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM250-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf69-2:1
4.0 lnc-C9orf69-2:1
4.1 lnc-C9orf69-2:1
5.0 lnc-C9orf69-2:1
5.1 lnc-TMEM250-2:1
5.2 lnc-TMEM250-2:6