Transcript: lnc-TMEM255B-5:29

Basic information

LNCipedia transcript ID: lnc-TMEM255B-5:29 
LNCipedia gene ID: lnc-TMEM255B-5
Location (hg38): chr13:113898525-113923512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2772 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000535320; ENST00000535320.1; LINC00452-201
Alternative gene names: ENSG00000229373; RP11-199F6.8; ENSG00000229373.2; LINC00452; OTTHUMG00000017394.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8346 non-coding 
CPAT coding probability 99.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM255B-5:29 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70B-4:2
3.1 lnc-FAM70B-5:2
4.0 lnc-FAM70B-5:2
4.1 lnc-FAM70B-5:2
5.0 lnc-FAM70B-5:2
5.1 lnc-TMEM255B-5:10
5.2 lnc-TMEM255B-5:29