Transcript: lnc-TMEM258-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM258-3:1 
LNCipedia gene ID: lnc-TMEM258-3
RefSeq ID: NR_026882
Location (hg38): chr11:61754029-61757664
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 936 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT021702; NR_026882; NR_026882.1
Alternative gene names: DKFZP434K028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.791 non-coding 
CPAT coding probability 68.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM258-3:1 yes no no no

Available literature

  1. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf10-3:4
4.0 lnc-C11orf10-3:4
4.1 lnc-C11orf10-3:4
5.0 lnc-C11orf10-3:4
5.1 lnc-LTBP3-155:1
5.2 lnc-TMEM258-3:1