Transcript: lnc-TMEM30B-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM30B-1:1 
LNCipedia gene ID: lnc-TMEM30B-1
Ensembl Gene ID: ENSG00000247287
Ensembl Transcript ID: ENST00000500036
Location (hg38): chr14:61303021-61322818
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4499 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500036; ENST00000500036.2; RP11-902B17.1-001; OTTHUMT00000413995.1; NONHSAT037253
Alternative gene names: ENSG00000247287; RP11-902B17.1; ENSG00000247287.2; OTTHUMG00000171532.1; AL359220.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.1898 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM30B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM30B-1:2
3.1 lnc-TMEM30B-1:1
4.0 lnc-TMEM30B-1:1
4.1 lnc-TMEM30B-1:1
5.0 lnc-TMEM30B-1:1
5.1 lnc-DHRS7-16:3
5.2 lnc-TMEM30B-1:1