Transcript: lnc-TMEM30B-1:3

Basic information

LNCipedia transcript ID: lnc-TMEM30B-1:3 
LNCipedia gene ID: lnc-TMEM30B-1
Ensembl Gene ID: ENSG00000247287
Ensembl Transcript ID: ENST00000554086
Location (hg38): chr14:61298164-61322794
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 781 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554086; ENST00000554086.1; RP11-902B17.1-002; OTTHUMT00000413994.1; NONHSAT037251
Alternative gene names: ENSG00000247287; RP11-902B17.1; ENSG00000247287.2; OTTHUMG00000171532.1; AL359220.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.8125 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM30B-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM30B-1:3
3.1 lnc-TMEM30B-1:3
4.0 lnc-TMEM30B-1:3
4.1 lnc-TMEM30B-1:3
5.0 lnc-TMEM30B-1:3
5.1 lnc-DHRS7-16:9
5.2 lnc-TMEM30B-1:3