Transcript: lnc-TMEM56-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM56-2:1 
LNCipedia gene ID: lnc-TMEM56-2
Ensembl Gene ID: ENSG00000230427
Ensembl Transcript ID: ENST00000451611
RefSeq ID: NR_132786
Location (hg38): chr1:95061596-95067545
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1096 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000451611.1; RP11-313A24.1-001; OTTHUMT00000029696.1; NONHSAT004639; NR_132786.1
Alternative gene names: ENSG00000230427.1; RP11-313A24.1; OTTHUMG00000010779.1; AC095033.1; LOC101928098


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.5347 non-coding 
CPAT coding probability 7.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM56-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM56-2:1
4.0 lnc-TMEM56-2:1
4.1 lnc-TMEM56-2:1
5.0 lnc-TMEM56-2:1
5.1 lnc-BTBD8-40:1
5.2 lnc-TMEM56-2:1