Transcript: lnc-TMEM70-1:2

Basic information

LNCipedia transcript ID: lnc-TMEM70-1:2 
LNCipedia gene ID: lnc-TMEM70-1
Location (hg38): chr8:73879708-73904727
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1184 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014761; NONHSAT127268
Alternative gene names: XLOC_006844; linc-TMEM70-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.8248 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM70-1:2 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM70-1:2
3.1 lnc-TMEM70-1:2
4.0 lnc-TMEM70-1:2
4.1 lnc-TMEM70-1:2
5.0 lnc-TMEM70-1:2
5.1 lnc-SULF1-39:8
5.2 lnc-TMEM70-1:2