Transcript: lnc-TMEM71-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM71-1:1 
LNCipedia gene ID: lnc-TMEM71-1
Location (hg38): chr8:132838130-132844298
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 773 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000429151.1; AF230666.2-001; OTTHUMT00000308941.1; NONHSAT129198
Alternative gene names: ENSG00000223697.1; AF230666.2; OTTHUMG00000148655.1; ENSG00000223697.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0275 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM71-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM71-1:1
4.0 lnc-TMEM71-1:1
4.1 lnc-TMEM71-1:1
5.0 lnc-TMEM71-1:1
5.1 lnc-FAM84B-63:1
5.2 lnc-TMEM71-1:1