Transcript: lnc-TMEM72-1:3

Basic information

LNCipedia transcript ID: lnc-TMEM72-1:3 
LNCipedia gene ID: lnc-TMEM72-1
Ensembl Gene ID: ENSG00000223462
Ensembl Transcript ID: ENST00000425541
Location (hg38): chr10:44937508-44955725
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT013046; ENST00000425541.2
Alternative gene names: ENSG00000223462.2; RP11-285G1.9; AL353801.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8778 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM72-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASSF4-1:3
4.0 lnc-TMEM72-1:3
4.1 lnc-TMEM72-1:3
5.0 lnc-TMEM72-1:3
5.1 lnc-NPY4R2-59:2
5.2 lnc-TMEM72-1:3