Transcript: lnc-TMEM88B-3:4

Basic information

LNCipedia transcript ID: lnc-TMEM88B-3:4 
LNCipedia gene ID: lnc-TMEM88B-3
Location (hg38): chr1:1399530-1400979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1149 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000418833
Alternative gene names: ENSG00000224870; RP4-758J18.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -99.7972 non-coding 
CPAT coding probability 14.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM88B-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM88B-2:4
3.1 lnc-TMEM88B-3:4
4.0 lnc-TMEM88B-3:4
4.1 lnc-TMEM88B-3:4
5.0 lnc-TMEM88B-3:4
5.1 lnc-VAMP3-102:4
5.2 lnc-TMEM88B-3:4