Transcript: lnc-TMEM88B-6:4

Basic information

LNCipedia transcript ID: lnc-TMEM88B-6:4 
LNCipedia gene ID: lnc-TMEM88B-6
Location (hg38): chr1:1407377-1410854
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1411 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272455.1|ENCT00000000289.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.6388 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM88B-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMEM88B-6:4
5.0 lnc-TMEM88B-6:4
5.1 lnc-VAMP3-101:2
5.2 lnc-TMEM88B-6:4