Transcript: lnc-TMEM9-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM9-1:1 
LNCipedia gene ID: lnc-TMEM9-1
Ensembl Gene ID: ENSG00000229821
Ensembl Transcript ID: ENST00000453155
Location (hg38): chr1:201222113-201223123
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 771 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453155.1; RP11-567E21.3-001; OTTHUMT00000097762.1; NONHSAT008730
Alternative gene names: ENSG00000229821.1; RP11-567E21.3; OTTHUMG00000040658.1; AC103925.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.4471 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM9-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM9-1:1
4.0 lnc-TMEM9-1:1
4.1 lnc-TMEM9-1:1
5.0 lnc-TMEM9-1:1
5.1 lnc-MYOG-58:1
5.2 lnc-TMEM9-1:1