Transcript: lnc-TMEM97-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM97-1:1 
LNCipedia gene ID: lnc-TMEM97-1
Ensembl Gene ID: ENSG00000264486
Ensembl Transcript ID: ENST00000578466
Location (hg38): chr17:28256438-28265551
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578466.1; CTD-2008P7.3-001; OTTHUMT00000445676.1; NONHSAT052378
Alternative gene names: ENSG00000264486.1; CTD-2008P7.3; OTTHUMG00000179303.1; AC061975.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.6684 non-coding 
CPAT coding probability 21.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM97-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM97-1:1
4.0 lnc-TMEM97-1:1
4.1 lnc-TMEM97-1:1
5.0 lnc-TMEM97-1:1
5.1 lnc-PIPOX-45:1
5.2 lnc-TMEM97-1:1