Transcript: lnc-TMEM98-2:3

Basic information

LNCipedia transcript ID: lnc-TMEM98-2:3 
LNCipedia gene ID: lnc-TMEM98-2
Ensembl Gene ID: ENSG00000236377
Ensembl Transcript ID: ENST00000444464
Location (hg38): chr17:32905662-32906584
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025166; ENST00000444464; ENST00000444464.1; AC084809.3-001; OTTHUMT00000256182.1; NONHSAT052970
Alternative gene names: XLOC_012170; linc-TMEM98; ENSG00000236377; AC084809.3; ENSG00000236377.1; OTTHUMG00000132776.1; AC084809.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1549 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM98-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM98-2:2
3.1 lnc-TMEM98-2:3
4.0 lnc-TMEM98-2:3
4.1 lnc-TMEM98-2:3
5.0 lnc-TMEM98-2:3
5.1 lnc-NSRP1-87:9
5.2 lnc-TMEM98-2:3