Transcript: lnc-TMIGD1-3:2

Basic information

LNCipedia transcript ID: lnc-TMIGD1-3:2 
LNCipedia gene ID: lnc-TMIGD1-3
Location (hg38): chr17:30550443-30551781
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT052775
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.7689 non-coding 
CPAT coding probability 7.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMIGD1-3:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-3:3
4.0 lnc-AC006050.2.1-3:3
4.1 lnc-AC006050.2.1-3:3
5.0 lnc-AC006050.2.1-3:3
5.1 lnc-SLC6A4-10:2
5.2 lnc-TMIGD1-3:2