Transcript: lnc-TMIGD1-3:3

Basic information

LNCipedia transcript ID: lnc-TMIGD1-3:3 
LNCipedia gene ID: lnc-TMIGD1-3
Location (hg38): chr17:30551193-30551751
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000581745.1; RP11-218M11.5-001; OTTHUMT00000443630.1; NONHSAT052778
Alternative gene names: ENSG00000263983.1; RP11-218M11.5; OTTHUMG00000178855.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.1277 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMIGD1-3:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-3:1
4.0 lnc-AC006050.2.1-3:1
4.1 lnc-AC006050.2.1-3:1
5.0 lnc-AC006050.2.1-3:1
5.1 lnc-SLC6A4-10:3
5.2 lnc-TMIGD1-3:3