Transcript: lnc-TMIGD1-3:4

Basic information

LNCipedia transcript ID: lnc-TMIGD1-3:4 
LNCipedia gene ID: lnc-TMIGD1-3
Ensembl Gene ID: ENSG00000263860
Ensembl Transcript ID: ENST00000579378
Location (hg38): chr17:30550493-30551189
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579378.1; RP11-218M11.3-001; OTTHUMT00000443629.1; NONHSAT052777
Alternative gene names: ENSG00000263860.1; RP11-218M11.3; OTTHUMG00000178854.1; AC011840.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMIGD1-3:4 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006050.2.1-4:1
4.0 lnc-AC006050.2.1-3:4
4.1 lnc-AC006050.2.1-3:4
5.0 lnc-AC006050.2.1-3:4
5.1 lnc-SLC6A4-10:4
5.2 lnc-TMIGD1-3:4