Transcript: lnc-TMPRSS15-13:1

Basic information

LNCipedia transcript ID: lnc-TMPRSS15-13:1 
LNCipedia gene ID: lnc-TMPRSS15-13
Ensembl Gene ID: ENSG00000227075
Ensembl Transcript ID: ENST00000452500
Location (hg38): chr21:21933315-21975681
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028883; ENST00000452500; ENST00000452500.1; AP000472.3-001; OTTHUMT00000171059.1; NONHSAT081386
Alternative gene names: XLOC_014022; linc-TMPRSS15-1; ENSG00000227075; AP000472.3; ENSG00000227075.1; OTTHUMG00000078257.1; AP000472.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.2171 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS15-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-12:1
3.1 lnc-TMPRSS15-13:1
4.0 lnc-TMPRSS15-13:1
4.1 lnc-TMPRSS15-13:1
5.0 lnc-TMPRSS15-13:1
5.1 lnc-N6AMT1-57:1
5.2 lnc-TMPRSS15-13:1