Transcript: lnc-TMPRSS2-1:2

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-1:2 
LNCipedia gene ID: lnc-TMPRSS2-1
Ensembl Gene ID: ENSG00000228318
Ensembl Transcript ID: ENST00000411427
Location (hg38): chr21:41441056-41445708
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1116 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411427.3
Alternative gene names: ENSG00000228318.3; AP001610.5; AP001610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 210.4991 coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMPRSS2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TMPRSS2-1:2
4.1 lnc-TMPRSS2-1:2
5.0 lnc-TMPRSS2-1:2
5.1 lnc-POFUT2-82:1
5.2 lnc-TMPRSS2-1:2