Transcript: lnc-TMPRSS2-3:1

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-3:1 
LNCipedia gene ID: lnc-TMPRSS2-3
Ensembl Gene ID: ENSG00000223400
Ensembl Transcript ID: ENST00000418874
Location (hg38): chr21:41576135-41581319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 346 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028940; ENST00000418874; ENST00000418874.1; AP006748.1-001; OTTHUMT00000195196.1; NONHSAT082268
Alternative gene names: XLOC_014087; linc-TMPRSS2-1; ENSG00000223400; AP006748.1; ENSG00000223400.1; OTTHUMG00000086763.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.4118 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS2-2:1
3.1 lnc-TMPRSS2-3:1
4.0 lnc-TMPRSS2-3:1
4.1 lnc-TMPRSS2-3:1
5.0 lnc-TMPRSS2-3:1
5.1 lnc-POFUT2-75:1
5.2 lnc-TMPRSS2-3:1