Transcript: lnc-TMPRSS2-83:12

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:12 
LNCipedia gene ID: lnc-TMPRSS2-83
Location (hg38): chr21:41141500-41148133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2088 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000441268.1; LINC00323-001; OTTHUMT00000195053.1; NONHSAT082231
Alternative gene names: ENSG00000226496.1; LINC00323; OTTHUMG00000086741.1; PRED42; FLJ37173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.6725 non-coding 
CPAT coding probability 11.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:12 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DSCAM-1:1
4.0 LINC00323:1
4.1 LINC00323:1
5.0 LINC00323:1
5.1 lnc-POFUT2-83:12
5.2 lnc-TMPRSS2-83:12