Transcript: lnc-TMPRSS2-83:13

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:13 
HGNC Gene Symbol: lnc-TMPRSS2-83    
HGNC Full Gene Name: long intergenic non-protein coding RNA 323
Ensembl Gene ID: ENSG00000226496
Ensembl Transcript ID: ENST00000441268
Location (hg38): chr21:41141493-41148133
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2095 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441268.2
Alternative gene names: ENSG00000226496.2; LINC00323; PRED42; FLJ37173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -63.6725 non-coding 
CPAT coding probability 11.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:13 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00323:2
4.1 LINC00323:2
5.0 LINC00323:2
5.1 lnc-POFUT2-83:13
5.2 lnc-TMPRSS2-83:13