Transcript: lnc-TMPRSS2-83:18

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:18 
LNCipedia gene ID: lnc-TMPRSS2-83
Location (hg38): chr21:41143180-41148063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1210 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226496.1|ENST00000446910.1
Alternative gene names: PRED42; FLJ37173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -106.9997 non-coding 
CPAT coding probability 14.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:18 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00323:18
5.0 LINC00323:18
5.1 lnc-POFUT2-83:18
5.2 lnc-TMPRSS2-83:18