Transcript: lnc-TMPRSS2-83:19

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:19 
HGNC Gene Symbol: lnc-TMPRSS2-83    
HGNC Full Gene Name: long intergenic non-protein coding RNA 323
Ensembl Gene ID: ENSG00000226496
Ensembl Transcript ID: ENST00000446910
Location (hg38): chr21:41143180-41147433
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446910.1; LINC00323-003; OTTHUMT00000195055.1; NONHSAT082233
Alternative gene names: ENSG00000226496.1; LINC00323; OTTHUMG00000086741.1; ENSG00000226496.2; PRED42; FLJ37173


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.9997 non-coding 
CPAT coding probability 25.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:19 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DSCAM-1:2
4.0 LINC00323:4
4.1 LINC00323:4
5.0 LINC00323:4
5.1 lnc-POFUT2-83:19
5.2 lnc-TMPRSS2-83:19