Transcript: lnc-TMPRSS2-83:6

Basic information

LNCipedia transcript ID: lnc-TMPRSS2-83:6 
HGNC Gene Symbol: lnc-TMPRSS2-83    
HGNC Full Gene Name: placenta specific 4
Ensembl Gene ID: ENSG00000280109
Ensembl Transcript ID: ENST00000414699
Location (hg38): chr21:41180532-41186320
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 336 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414699.1; AL773572.7-002; OTTHUMT00000368754.1; NONHSAT082238
Alternative gene names: ENSG00000225745.4; AL773572.7; OTTHUMG00000086744.2; PLAC4; ENSG00000225745.8; PRED42; FLJ37173; AL773572.1; ENSG00000280109.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.7995 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS2-83:6 no no no no

Available literature

  1. Fiedler (2015), Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization., J. Am. Coll. Cardiol.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMPRSS2-4:4
4.0 lnc-TMPRSS2-4:4
4.1 LINC00323:11
5.0 LINC00323:11
5.1 lnc-POFUT2-83:6
5.2 lnc-TMPRSS2-83:6